Biology
- General information on Open Access in the biological sciences
- Open Access journals
- Subject-based repositories and databases
- Member of open-access.net Scientific Advisory Board from the biological sciences
In this section we have compiled information on Open Access (OA) in the biological sciences. If you have any comments or suggestions on this topic, please do not hesitate to send us an E-mail.
General information on Open Access in the biological sciences
Thanks to the activities of publishers of OA biological sciences journals and to several fact databases in the field of molecular biology and bioinformatics which are indispensable to research, OA is now firmly established in the biological sciences.
Promotion of Open Access by organisations and scientific societies
Because the biological sciences encompass diverse disciplines, there are many individual scientific societies. As a result of this fragmentation, these societies have not played a leading role in the debate on OA up to now. However, via its E-mailing list, the German Zoological Society called on its members to sign the Petition to the European Commission to support OA. And in a statement issued in July 2005 the German Federal Conference of Biology Faculties (Bundesfachschaftentagung Biologie) emphatically endorsed the OA principle.
Open Access publishers in the biological sciences
The Public Library of Science (PLoS) is a non-profit OA publisher which was co-founded in 2001 by the medicine Nobel Laureate and former director of the National Institutes of Health (NIH) Harold Varmus with the aim of producing high-quality OA journals comparable with Science and Nature. The first journal, PLoS Biology, was launched in October 2003; PLoS Medicine followed in 2004. The impressive Impact Factors of these journals (for 2007, 13.5 and 12.6 respectively) are an indication of their high scientific quality. PLoS currently has a portfolio of seven journals, five of which are already covered by the Science Citation Index (SCI). While the two most recently launched journals are not yet indexed by SCI, they are, however, tracked by other indexing databases.
PLoS journals are financed in part by publication fees which range from $1,300 to $2,850 per article. Authors who are affiliated to one of PLoS' institutional members are eligible for a discount on this fee. In December 2002, PLoS received a grant of $9m in seed capital from the Moore Foundation to finance the launch of OA publishing operations.
BioMed Central, an independent British OA publisher established in 1998, has a portfolio of 189 OA journals (as of September 2008). Already 41 BioMed Central journals have an official Impact Factor, and, for 2007, unofficial Impact Factors have been calculated for 85 others. Like PLoS, BioMed Central's business model is based on article-processing charges (APCs). These range from $180 to $2,445 per article. If the submitting author's organisation is a full member of BioMed Central, the APC is generally covered by membership. In the case of supporter members, a discounted APC is payable. As of June 2008, the membership list featured some 319 institutions – mostly universities.
The Virtual Library of Biology vifabio, a project funded by the German Research Foundation (DFG), went online at the end of March 2007. Like other virtual academic libraries, vifabio offers bundled access to both licensed and free resources which include library catalogues, selected Internet sources, electronic journals, databases and full-text documents. Vifabio's Internet Guide is a database which records and describes some 1,000 quality-controlled Internet sources from all fields of biology. These sources include over 400 online biological sciences databases. They can also be accessed directly – in many cases free of charge – via the menu item Databases. The vifabio website also provides detailed information on DFG-funded national licences, explaining how institutions and private individuals can access nationally-licensed resources such as biological sciences publications and databases.
Open Access journals
The Directory of Open Access Journals features between 550 and 620 OA journals in the categories Biology and Life Sciences and Sciences. This figure far exceeds that for the STM subjects informatics or physics.
- BioMed Central (BMC) 189 medical and biological OA journals
- Public Library of Science (PLoS), 7 medical and biological OA journals.
- PubMed Central (PMC), the U.S. National Institutes of Health (NIH) free digital archive of biomedical and life sciences journal literature.
- In cooperation with the Electronic Journals Library (EZB), the Virtual Library of Biology vifabio offers easy access to the many electronic biological sciences journals. A "traffic-lights system" indicates the different access options. OA journals have a green light.
While in other fields OA journals with high Journal Impact Factors are quite rare, there is an impressive number of biological sciences journals with high and sometimes outstanding ratings.
Selection
The following journals are ranked by Journal Impact Factor compiled from the online edition of the Journal Citation Reports (Copyright 2008):
- PLoS Biology
Scope: all areas of biological sciences from ecology to molecular biology
Public Library of Science, 2003-
Impact Factor: 13.501 - Genome Biology
BioMed Central; Genome Biology Ltd., 2000-
Impact Factor: 6.589 - BMC Developmental Biology
BioMed Central, 2000-
Impact Factor: 3.337
Further Open Access journals
-
Tropical Conservation Science is a peer-reviewed open-access journal that publishes original research papers and state-of-the-art reviews of broad interest to the field of conservation of tropical forests and other tropical ecosystems.
Subject-based repositories and databases
Repositories
To date, there are not many repositories for preprints and postprints in the biological sciences. The quantitative-biology section in the well-known preprint repository arXiv.org deserves special mention. It is divided into ten categories.
Databases
See also Open Access to data
- PubMed:
The PubMed database of the U.S. National Library of Medicine (NLM) is the Web version of the MEDLINE database. It features links to full-text articles and to numerous other databases. MEDLINE covers approximately 5,000 biomedical journals and contains some 14 million citations. - Human Genome Project:
This publicly-funded international research project was launched in the USA in October 1990. At the outset, some 1,000 scientists from 40 countries participated in the programme. Project goals were to identify and sequence human DNA. The project was originally planned to last 15 years but reached its goals by 2003. - GenBank:
The GenBank is the U.S. National Institutes of Health (NIH) genetic sequence database which contains all publicly-accessible DNA sequences. - The Virtual Library of Biology vifabio provides fast access to some 400 online biological databases.
- Biomedical Engineering:
An annotated list of ten other openly-accessible databases from agricultural sciences to protein research can be found on this City College of New York (CCNY) Libraries webpage under the sub-heading Open Access Databases (use the browser's search function).
Member of the open-access.net Scientific Advisory Board from the biological sciences
Prof. Dr. Diethard Tautz - President of the German Zoological Society (DZG), Editor-in-Chief of Frontiers in Zoology
















